rs52273588 SNP Detail

Summary

• ID
  rs52273588
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:101011630 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCACATCTAA TACACCTTGT
  GCTGCCATGT AGGGTAGAGC TGAATTGCCC TGCTCTGCTC ACTTCAGACG CCTCAGCACT
  CAAGATGCCC GGTCTACGTA AATGACACTG GCTCAGGGTC ACAAATGAGC TGCACACCAT
  GCATGTGTCA CTAGCTGCTT GCCTTCTTCC CTTCCTCCTT CCTTCCTTCT TTCTTTCTTT
  T
  CTTTTTCCCC CTAAAGTCTT GCTAGACAGC CTAAGCTAGC CTTGAACTCT CAATCTTCCT
  GCTTCTGCCT CCCAAAACTG AGATTACCAG TAGACACTAG CAAATCTGAC TCCATTTCCA
  CCTTCAAACC GCTCATGCAG AGGAAGGGAT GGAGTGCTGA GGATCCCTAG GTGAAAGTGG
  TATCTGCTCG CCTTTACCAC                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J
ss135544360	ENSMUSSNP957676	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
SNP Consensus Information
SNP					Consensus Type	DBA/2J
rs52273588					SNP	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:101011630 () rs orientation: forward

Symbol	Name	Function Class
Ptgfrn	prostaglandin F2 receptor negative regulator	Intron
Rr581960	regulatory region 581960	1103 bp proximal