rs52273314 SNP Detail

Summary

• ID
  rs52273314
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:73754787 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACCTCTTAC ACATTTGTAG
  CAAATATGCT GTCTCTGTCT CTGTTCCCTG CCATTGGGTC CCCTTCCCCC TACCTGGACT
  GCCTGGTTGG GCCTCAGTGG GAGAGGATGT GCCTAGACCT GCTGGGATTG GATGTCCCAG
  GGTGGGGTGA TACCCAAGTG GGGCTTCCCC TTCTCTGAGG GGGAGGGGAG GGAGCAGTGG
  R
  GTAAGGGATT TGTAAGGGTG GGACTGGAAA GAGAGGAGGG GATGTGATCA GGAAGTAAAG
  TGAATTAAAA AAATAAAATA AATAAATTTT AAAAGGAAGA TTCATATTTT AAACATTTTC
  TTTATTTTAA TCTTTGATGT ACATTGTTTT ACCTGCATGT ATGTCTGTGT GAGGGTGTTG
  GATCACCTGG AACAGAAATT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss146760155	ENSMUSSNP152401	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs52273314					SNP	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:73754787 () rs orientation: forward

Symbol	Name	Function Class
Rr559257	regulatory region 559257	684 bp proximal
Rr559258	regulatory region 559258	797 bp proximal
Rr559259	regulatory region 559259	1499 bp proximal