rs52271613 SNP Detail

Summary

• ID
  rs52271613
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:137552345 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGTAG CAGGTGGTTT TTTTGGTTTT
  G
  TTGTTGTTGT TGTTGTTTTG GTTTT                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss135944479	ENSMUSSNP2522456	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss320976898	CHEV_3_137509548	CHEVERUD	SCREENING_POP	f	SNP			G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs52271613					SNP	G	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:137552345 () rs orientation: forward

Symbol	Name	Function Class
Rr375793	regulatory region 375793	680 bp upstream
Rr585988	regulatory region 585988	1848 bp distal
Rr585989	regulatory region 585989	556 bp distal