rs52270822 SNP Detail

Summary

• ID
  rs52270822
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:141303314 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A TATAGGAGTT GGAGACAAGG GATATGAAGT CAAGGCAATC
  CAGGACGATA TAGTTAGTTC AAGGTCAGCC TGGGATACTC AGGACACTAT CTCACTGAAA
  Y
  AAAACCCCCA AATAAAAACA ACCAACTCCC CCCACCCCAG ACAAAAACAA GACACAAGGA
  AAGAACATAT GTTTATTTTT TTCTGTGTGC AACTTAGAAG T                    
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss147741011	ENSMUSSNP5454686	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs52270822					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141303314 () rs orientation: forward

Symbol	Name	Function Class
Fblim1	filamin binding LIM protein 1	59 bp downstream
Gm68503	predicted gene, 68503	829 bp upstream
Rr603811	regulatory region 603811	1822 bp distal
Rr603812	regulatory region 603812	840 bp distal
Rr603813	regulatory region 603813	339 bp distal
Rr603814	regulatory region 603814	410 bp distal
Rr603815	regulatory region 603815	1056 bp proximal
Tssr44332	transcription start site region 44332	802 bp downstream