rs52269798 SNP Detail

Summary

• ID
  rs52269798
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:8946765 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGGTGCTTTT CTTAAATAAT CAGTCCTATT CAGACAGAGA
  TTCCAAGGTC ACTGATCTTA CAGCATGCAT ATATATATAT ATATATATAT ATATATATAT
  R
  TATGTATTAT ATGTATATGT ATATATATAT GTAAAATAGC CGAATGACTG TATAAGTTGG
  AATGTTTTCG AAGAATGTGA GGAAAATAGC TTAGTATGG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss132976302	ENSMUSSNP5450011	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss321738437	CHEV_6_8896765	CHEVERUD	SCREENING_POP	f	SNP			A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs52269798					SNP	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:8946765 () rs orientation: forward

Symbol	Name	Function Class
Nxph1	neurexophilin 1	1666 bp upstream
Rr626455	regulatory region 626455	1359 bp proximal
Rr626456	regulatory region 626456	1864 bp proximal
Tssr54925	transcription start site region 54925	1662 bp upstream
Tssr54926	transcription start site region 54926	1805 bp upstream
Tssr54927	transcription start site region 54927	1843 bp upstream