rs52268501 SNP Detail

Summary

• ID
  rs52268501
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:135239660 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CATCA CTATAACAGT AGTATATTTT
  T
  TTTATTTATT TATTTTGGGT TTTTT                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss145530466	ENSMUSSNP238547	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss319989059	CHEV_1_137208499	CHEVERUD	SCREENING_POP	f	SNP			T	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs52268501					SNP	T	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135239660 () rs orientation: forward

Symbol	Name	Function Class
Cpgi788	CpG island 788	1377 bp proximal
Rr367008	regulatory region 367008	1727 bp upstream
Rr419124	regulatory region 419124	257 bp distal
Rr419125	regulatory region 419125	1189 bp proximal
Rr419126	regulatory region 419126	1846 bp proximal
Timm17a	translocase of inner mitochondrial membrane 17a	Intron
Tssr13839	transcription start site region 13839	1807 bp downstream