rs52266955 SNP Detail

Summary

• ID
  rs52266955
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:129941030 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGGG AGCAGGGAGG GGGCAGGGGG
  Y
  AGGGATCTGA GTCTTTCCAA CCTTC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss147458182	ENSMUSSNP1077841	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss321316724	CHEV_4_129724481	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs52266955					SNP	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:129941030 () rs orientation: forward

Symbol	Name	Function Class
Col16a1	collagen, type XVI, alpha 1	608 bp upstream
Cpgi14918	CpG island 14918	1240 bp distal
Cpgi14919	CpG island 14919	86 bp proximal
Gm12963	predicted gene 12963	within coordinates
Rr600419	regulatory region 600419	1122 bp distal
Rr600420	regulatory region 600420	1576 bp distal
Rr600421	regulatory region 600421	within coordinates
Rr600422	regulatory region 600422	512 bp proximal
Rr600423	regulatory region 600423	614 bp proximal
Tssr1308	transcription start site region 1308	309 bp upstream
Tssr39217	transcription start site region 39217	123 bp upstream
Tssr39218	transcription start site region 39218	619 bp upstream
Tssr39219	transcription start site region 39219	677 bp upstream