rs52266273 SNP Detail

Summary

• ID
  rs52266273
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:135750934 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCTCTCTC TCTCACACAC
  ACACACACAC ACACACACAC ACACATTAAA TGGAATATAA GAAAAGAAGG GAAACAAGAA
  AGGAATGAAG AAAGAAAGGA GACAAGTGCT GTCGTGGTGG TGCACGCCTG TAATCCCAAC
  ACTCGGGAGG CAGAGGCAGG CAGATTTCTG AGTTCGAGGC CAGCCTGGTC TACAGAGTGA
  R
  TTCCAGGACA GCCAGGGCTA TACAGAGAAA CCCTGTGTCG GAAAGAAAGA AAGGAAGAAA
  GAAAGAAAGG AAGGAAGGAA GGAAGAAAGA AAGAAAGAAA GAAAGAAAGA AAGAAAGAAA
  GAAAGAAAGA GAGAGAGGAA GGAAGAAGAC AAACTGTCTA GTTAAGAAGG AATACTGAAT
  TCTCTTCTCC TGGAAAACAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147556023	ENSMUSSNP4890961	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs52266273					SNP	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135750934 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15090	CpG island 15090	1509 bp distal
Eloa	elongin A	1974 bp upstream
Gm68304	predicted gene, 68304	within coordinates
Rr398604	regulatory region 398604	1651 bp downstream
Rr602239	regulatory region 602239	1871 bp distal
Rr602240	regulatory region 602240	1612 bp distal
Rr602241	regulatory region 602241	1422 bp distal
Rr602242	regulatory region 602242	1879 bp proximal
Tssr44023	transcription start site region 44023	1958 bp upstream
Tssr44024	transcription start site region 44024	1929 bp upstream
Tssr44025	transcription start site region 44025	1887 bp upstream