rs52264064 SNP Detail

Summary

• ID
  rs52264064
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:69762088 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCACAACCT TTAGAGAGAA
  AAAAAATCCC TTAGTTCTGC GATGAGGGTG GCAGGAGCAT TTCGGGCTGT ATTTTATTTG
  GAAACAGCTA CCTGCACCCA GGACTTCCCT TCCTTTCCTT TTCTTGTCTT TTCTCTTCTG
  CTCCCCTCTC CTTCCCTCCC TTTCTCTCTC CTCCGTATCT GGTTCTCACA GATCTCTTGG
  M
  CCCTGGGGTC TACACTGTCT GTGCTAACTA GCTTTCTCAT TCTGTTGTAC AGTCTCAGCA
  TCCTCTGAGA CAGCCTAAAC CACCCCATGA TTTTGGCCTG GCATATAAAT TAAACCCCCA
  GGTATCAGTT ACTGCTTAGA TACTTCTTTG GCTATAAAGT TGACTGGGTT GTGAAGGACT
  TGTTCCTTGG TATTCTCCCT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	MSM/Ms
ss146730757	ENSMUSSNP2294564	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	A/J	MSM/Ms
rs52264064					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:69762088 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr558496	regulatory region 558496			1796 bp distal
Tssr18186	transcription start site region 18186			1208 bp downstream
Ubr3	ubiquitin protein ligase E3 component n-recognin 3			Intron
				Noncoding-Transcript-Variant