rs52263804 SNP Detail

Summary

• ID
  rs52263804
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:75511924 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAAAACTGCT TTTTAAAACC TAGCTGGTGA AAGGTTCAGC
  AGTGAAGACC ATGCACTGCC CGGAGGACCT GGCACCCACG TGACGCTGCT CACAACTGCC
  C
  GGAACTCCAG CTCTAGGAAA TCTGACACCT CTAGCTTCTA CACACACACA CACACACACA
  CACACACACA CACACACACA CACACACACA CACACACAC                       
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss146768188	ENSMUSSNP3279751	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs52263804					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:75511924 () rs orientation: forward

Symbol	Name	Function Class
Igs15	intergenic site 15	within coordinates
Nfe2l2	nuclear factor, erythroid derived 2, like 2	Intron
Rr367218	regulatory region 367218	720 bp upstream
Rr559542	regulatory region 559542	within coordinates
Rr559543	regulatory region 559543	604 bp proximal
Rr559544	regulatory region 559544	892 bp proximal
Rr559545	regulatory region 559545	1096 bp proximal
Rr559546	regulatory region 559546	1182 bp proximal
Tssr18460	transcription start site region 18460	1619 bp upstream