rs52262983 SNP Detail

Summary

• ID
  rs52262983
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:32951729 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTCAGATAA TCAATGCTAT
  TTCCAGCCTT ATATGAATGC CATTCTACTC AAGAAAAATC TCATGGGGTT GGCTGCTCAG
  GACTTAGTGG GTAAAGTGCG CTCTGATGAA GCATGAGAAC CCAAATTCAA ATCCCTCAGC
  ACCGATATAC ATATAAATGC AAGCAAGAAA GTTAACACAC ATACATGCAC ACATGCAGGC
  R
  TGCATGCGCG CGCATGTGCA TGCTCTCTCT CTCTCTCTCA CGCACGCGCA CACGCACACG
  CGCACACGCA CACACACACA CACACGATCT GATGACAAAT GAGTGATGGA ACCTTTTGCT
  CACAGAGGTG GAGAGGTCAG CAGGTAGAAC GGTGAACATG ACGCTTCGAT CTTACCTGAG
  GCTGGTGATA AATTTACGGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss146163673	ENSMUSSNP3799180	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	A
ss321072564	CHEV_4_33038704	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs52262983					SNP	G	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:32951729 () rs orientation: forward

Symbol	Name	Function Class
Ankrd6	ankyrin repeat domain 6	888 bp upstream
Cpgi14106	CpG island 14106	365 bp distal
Cpgi14107	CpG island 14107	within coordinates
Rr590062	regulatory region 590062	914 bp distal
Rr590063	regulatory region 590063	1221 bp distal
Rr590064	regulatory region 590064	398 bp distal
Rr590065	regulatory region 590065	778 bp distal
Tssr41164	transcription start site region 41164	863 bp upstream