rs52261683 SNP Detail

Summary

• ID
  rs52261683
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:148218073 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCACCGGC AGAAGAGGAA
  GTGATACTTC ACAGGCCATG TTCCTCGCTG GAACACCTCT TCGGTTAAAT CGCTGCCATG
  GGAGCTGGGG ACTTTACTCA GCAGCAGAGC ATGTGCCTAG CATTCAGGAT CTGATACCTT
  GGTTGGGGTC TGAAATCTGG TGCTGAAAAA TAAAATCTGT AAGTGTGCCG GGATTTCAGT
  W
  CACATTTCTT TCTCTCTCTC TCTCTCTCTC TCTCTCTCTC TCTCTCTCTC TCTCTCTCTC
  TCTCTCTCTC TCTCTCTTTC TCTCTCTTTC TCTCTCTCTT TCTCTCTCTC TCTCTCTCTC
  TCTATGTCTC TATGTCTCTG TCTGTCTCTC TGTCTCTGTC TCTGTCTCTC TGTCTCTGTC
  TCTGTCTCTC TCTCTCTCTC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356070032	MGP_WTSI_2_148201889	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	A	T	T	T	T	A	T	T	T	T	T	T	T	T	T	A	A	T	T	A	A	A	T	T	A	A	T	T	T	T	A	A	A	A	T	A	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs52261683					SNP	T	T	T	A	T	T	T	T	A	T	T	T	T	T	T	T	T	T	A	A	T	T	A	A	A	T	T	A	A	T	T	T	T	A	A	A	A	T	A	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356070032	MGP_WTSI_2_148201889	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:148218073 () rs orientation: forward

Symbol	Name	Function Class
Gm39957	predicted gene, 39957	177 bp downstream
Rr566886	regulatory region 566886	1911 bp distal
Rr566887	regulatory region 566887	46 bp distal
Rr566888	regulatory region 566888	622 bp distal
Rr566889	regulatory region 566889	241 bp distal