rs52258687 SNP Detail

Summary

• ID
  rs52258687
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:72283051 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATGTGCCTAA GTGGGCACTT ACCTATATAA GTGGCACCCC
  AACACATGCA CACACACACA TACACACCCA CAGACGCAAT AAGACACACA CACACACACA
  Y
  ACACACACAC ACACACACAC ACACACACAC ACACACACAT ACACACACAC ACACACACAC
  ACGCACACAC ATACACACAC ACACACACAC ACACACACA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321821409	CHEV_6_72256061	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs52258687					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:72283051 () rs orientation: forward

Symbol	Name	Function Class
Rr632126	regulatory region 632126	1437 bp distal
Sftpb	surfactant associated protein B	Intron
Tssr57078	transcription start site region 57078	1753 bp downstream
Tssr57079	transcription start site region 57079	1737 bp downstream
Tssr57080	transcription start site region 57080	1444 bp downstream
Tssr57081	transcription start site region 57081	1422 bp downstream
Tssr57082	transcription start site region 57082	1020 bp downstream
Tssr57083	transcription start site region 57083	979 bp downstream
Tssr57084	transcription start site region 57084	407 bp downstream
Tssr57085	transcription start site region 57085	170 bp downstream
Tssr57086	transcription start site region 57086	125 bp downstream
Tssr57087	transcription start site region 57087	90 bp downstream
Tssr57088	transcription start site region 57088	38 bp downstream
Tssr57089	transcription start site region 57089	714 bp upstream
Tssr57090	transcription start site region 57090	767 bp upstream
Tssr57091	transcription start site region 57091	841 bp upstream
Tssr57092	transcription start site region 57092	1071 bp upstream