rs52253276 SNP Detail

Summary

• ID
  rs52253276
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:141234225 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCACGGGCT CCAGGTTCTT
  TTCTCCAGGG GCAGAGCAAA CCCCAGTAAG CTCAGCATCT AAGCCCCAAA CTGAAGACCT
  ATTCTTCTGG CCAGAAAACC ACCAAAAGAC AGACAGACAG ACAGACAGAC AGACAGACAG
  TCAGACAGAT GCACACACAC ATACACAAAC ACTTCTTTTA AGCGTTACTA AAATTCTAGA
  Y
  TTGACATCGT TTCTGGGAAA CCAGCTAGGA ATGCACCTGC CCCTGGCTCA TCGAAGTTGG
  AACTGGGCTC CCATCTTTCC TGCCTTAACT CACACCACTC CCAGCCCAGC CATGCCCCAC
  AGCCTTAAGA CACAAGGTTG TGTGGCAAGC AAGGCCTGCA GTGGCCAAAA CAGAACATCT
  GCTAAAGAAG GCCACACAGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147739720	ENSMUSSNP970802	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	T
ss321387744	CHEV_4_141062829	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs52253276					SNP	T	C	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141234225 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr603781	regulatory region 603781			within coordinates
Rr603782	regulatory region 603782			196 bp proximal
Rr603783	regulatory region 603783			469 bp proximal
Spen	spen family transcription repressor			Intron
				Noncoding-Transcript-Variant