rs52253187 SNP Detail

Summary

• ID
  rs52253187
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:125643305 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AACATTCTT TTTTGAAACA GTCTTTAAAT
  AATAAAAAAT GATTCAAATA CTATAGAGAA GTCATTATCA TTTGAGATAT AGGTGACAAA
  TGCTATAGCC TTCAGAATta tatatatata tatatactat ataatatata gtatataatg
  W
  ataatatatt atatataata tatatacaca cacatatata tgtgtgtgta tatatatata
  ACTTCTTTCA CCTACAAGGC AGTTCAGCTG GGCCTGGTCA CATCGTAATG AGTATCACTA
  CAAGTTGCAA GAAGCAGAAG TCTAATTTTA                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss135817783	ENSMUSSNP6673612	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T	A
ss320940431	CHEV_3_125552574	CHEVERUD	SCREENING_POP	f	SNP				A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs52253187					SNP	A	T	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:125643305 () rs orientation: forward

Symbol	Name	Function Class
Rr584614	regulatory region 584614	172 bp distal
Rr584615	regulatory region 584615	295 bp distal