rs52252517 SNP Detail

Summary

• ID
  rs52252517
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:148251308 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      C CCTCTCTGGA GCAGTTTGGC AGTGACGCCA CCAGGTCTGG
  ATAGCATTCT CTTGGGCTTA GAGATGAAGG CTGTGGAGTG GCGCGCGCAC ACACACACAC
  A
  CACACACACA CGCACACACA CGCACACGCG CACGCGCACA CGCGCGCGCG CACACACACA
  CGCGCGCGCG CACACACACA CGCGCGTACA CACACACAGA G                    
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ
ss147994802	ENSMUSSNP784780	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ
rs52252517					SNP	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148251308 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15296	CpG island 15296	1767 bp distal
Cpgi15297	CpG island 15297	within coordinates
Fbxo2	F-box protein 2	427 bp downstream
Gm68449	predicted gene, 68449	within coordinates
Rr604611	regulatory region 604611	396 bp proximal
Rr604612	regulatory region 604612	1369 bp proximal
Rr604613	regulatory region 604613	1401 bp proximal
Rr604614	regulatory region 604614	1626 bp proximal
Tssr44601	transcription start site region 44601	478 bp upstream