rs52249882 SNP Detail

Summary

• ID
  rs52249882
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:86982699 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTCTT CTTCCTTTTC CCCGCCACCC
  Y
  CCCAGCACCT CTTTGTTGCC AAAAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss146926853	ENSMUSSNP3049850	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
ss321199701	CHEV_4_86710366	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs52249882					SNP	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:86982699 () rs orientation: forward

Symbol	Name	Function Class
Rr594860	regulatory region 594860	1187 bp distal
Rr594861	regulatory region 594861	888 bp proximal
Slc24a2	solute carrier family 24 (sodium/potassium/calcium exchanger), member 2	Intron