rs52246085 SNP Detail

Summary

• ID
  rs52246085
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:143003906 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T TAAAGGTGTT GAGATGCAAC AGGATACTTA GTACCAAGAG
  CTAAACTTAT CTGATGCAAC TGTTCTAACA TGTGGTGTGT GTGTGTGTGT GTAGGTATGT
  R
  TGTGTTATAC TGTGTGTGTA GAGTTCAGAA GACAACTTCA GGTGTCACGG TGGTTTGGAT
  AGGAATGGCC TCCTCAGACT CATGTGTTTC ATTGCTTAGC T                    
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss147778489	ENSMUSSNP3342592	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs52246085					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:143003906 () rs orientation: forward

Symbol	Name	Function Class
Pdpn	podoplanin	Intron
Rr604183	regulatory region 604183	946 bp proximal
Tssr44444	transcription start site region 44444	1230 bp upstream
Tssr44445	transcription start site region 44445	1170 bp upstream
Tssr44446	transcription start site region 44446	1562 bp downstream