rs52245792 SNP Detail

Summary

• ID
  rs52245792
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:30911524 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTACCTTTTT TTTCCCCCAG
  AAGGTTAGTC ACCACAGGTG ATTCTAGTTT CAGATTCTAT ATCATATATA ATTATGTTTC
  ATAAATTGGA TGTGAATACT GCCTCATCAG ACTGATCAGA AAGGTCACAG TTTCTGCCCC
  GCCTCCCTCT AACACACACA AGAAGGCACA CGGCACACGT GTATGTTAAA TAGATTGAGT
  G
  GATGCTGGCT CAGCTTTTTT CACACACACA CACACACACA CACACACACA CACACACACA
  GAGAGAGAGA GAGAGAGAGA GAGAGAGAGA GAGAGAGAGA GAGAGAGAGA GAGAGAGAGA
  GAACAAACAA ACAGGGTTAG GTTGCCTCCA GTCAGGCAGT TTTGTATCAA ATGTGTTAGC
  ACTTTTTCCA ATGGCTCAAA                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CE/J	FVB/NJ	LEWES/EiJ	RF/J	RIIIS/J	SWR/J	ZALENDE/EiJ
ss357427661	MGP_WTSI_3_30756297	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CE/J	FVB/NJ	LEWES/EiJ	RF/J	RIIIS/J	SWR/J	ZALENDE/EiJ
rs52245792					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss357427661	MGP_WTSI_3_30756297	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:30911524 () rs orientation: forward

Symbol	Name	Function Class
Gm42199	predicted gene, 42199	1006 bp upstream
Gpr160	G protein-coupled receptor 160	Intron
Rr574831	regulatory region 574831	1465 bp distal
Rr574832	regulatory region 574832	1350 bp distal
Rr574833	regulatory region 574833	1018 bp distal
Rr574834	regulatory region 574834	718 bp distal
Tssr28695	transcription start site region 28695	1617 bp downstream
Tssr28696	transcription start site region 28696	1373 bp downstream
Tssr28697	transcription start site region 28697	1368 bp downstream
Tssr28698	transcription start site region 28698	1349 bp downstream