rs52245326 SNP Detail

Summary

• ID
  rs52245326
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:58598650 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGGG AGGAGAGAGA GAGAGACAGA
  S
  AGAGAGAGAG AGAGAGAGAG AGAGA                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57L/J	LG/J	LP/J	MA/MyJ	NON/ShiLtJ	NZO/HlLtJ	QSi5/Ianm	SM/J	SWR/J
ss640082516	FVB_NJ_3_58495151	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	G	G	C	C	C	G	C	G	G	C	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57L/J	LG/J	LP/J	MA/MyJ	NON/ShiLtJ	NZO/HlLtJ	QSi5/Ianm	SM/J	SWR/J
rs52245326					SNP	C	C	C	G	G	C	C	C	G	C	G	G	C	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss640082516	FVB_NJ_3_58495151	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:58598650 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
4930593A02Rik	RIKEN cDNA 4930593A02 gene			1360 bp upstream
Cpgi13205	CpG island 13205			237 bp distal
Cpgi13206	CpG island 13206			25 bp proximal
Rr367441	regulatory region 367441			434 bp downstream
Rr577266	regulatory region 577266			340 bp distal
Rr577267	regulatory region 577267			98 bp proximal
Rr577268	regulatory region 577268			810 bp proximal
Rr577269	regulatory region 577269			1043 bp proximal
Rr577270	regulatory region 577270			1161 bp proximal
Rr577271	regulatory region 577271			1402 bp proximal
Siah2	siah E3 ubiquitin protein ligase 2			Intron
				Noncoding-Transcript-Variant
Tssr29217	transcription start site region 29217			1261 bp upstream
Tssr29218	transcription start site region 29218			1382 bp upstream
Tssr33366	transcription start site region 33366			779 bp downstream
Tssr33367	transcription start site region 33367			827 bp downstream
Tssr33368	transcription start site region 33368			1162 bp downstream
Tssr33369	transcription start site region 33369			1196 bp downstream