rs52242352 SNP Detail

Summary

• ID
  rs52242352
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:69762074 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTAGGCGCA GTGAATCACA
  ACCTTTAGAG AGAAAAAAAA TCCCTTAGTT CTGCGATGAG GGTGGCAGGA GCATTTCGGG
  CTGTATTTTA TTTGGAAACA GCTACCTGCA CCCAGGACTT CCCTTCCTTT CCTTTTCTTG
  TCTTTTCTCT TCTGCTCCCC TCTCCTTCCC TCCCTTTCTC TCTCCTCCGT ATCTGGTTCT
  Y
  ACAGATCTCT TGGCCCCTGG GGTCTACACT GTCTGTGCTA ACTAGCTTTC TCATTCTGTT
  GTACAGTCTC AGCATCCTCT GAGACAGCCT AAACCACCCC ATGATTTTGG CCTGGCATAT
  AAATTAAACC CCCAGGTATC AGTTACTGCT TAGATACTTC TTTGGCTATA AAGTTGACTG
  GGTTGTGAAG GACTTGTTCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	MSM/Ms
ss146730755	ENSMUSSNP3160403	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	MSM/Ms
rs52242352					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:69762074 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr558496	regulatory region 558496			1782 bp distal
Tssr18186	transcription start site region 18186			1194 bp downstream
Ubr3	ubiquitin protein ligase E3 component n-recognin 3			Intron
				Noncoding-Transcript-Variant