rs52242347 SNP Detail

Summary

• ID
  rs52242347
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:133480761 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAGTGCAGG CAAACTTTCA
  CATACATAAG GTAAACAATA AATATGTTTA TATATATATA TAAACACACA CCCATATATA
  AAACACATAT ATAAACATAC CTCACATAAA ATATATTATA CATATATACC TATGCACATA
  TATATACATA TATGTATATA TATGTATATA TATATATGAA ACAATCCCCA CAACTAAGGT
  R
  ATTAAGATAT TAATCACACC CAAAGGTTCT TACACCCAAA GACTTTTCTT TTAAAATTCG
  TCCTTCCTGT CCTGCAACAG ACATTTTTCT TCCTTTTTTG GGAAAATGTG ATCTGCTTTT
  TCTTACTATA CATTACATTT TCTAGAATTG TACAAGATGG CATCAAATAA TATGTACTCT
  TGGTATGTTT TCTTCTGTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61084042	NES16591995	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	G	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs52242347					SNP	A	A	A	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61084042	NES16591995	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:133480761 () rs orientation: forward

Symbol	Name	Function Class
Rr585601	regulatory region 585601	1096 bp proximal