rs52240887 SNP Detail

Summary

• ID
  rs52240887
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:128282646 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      G ATAGATAGAT AGGTAGATAG ATAGACAGAT AGATGACAGG
  TAGACAGATG ATAGATAGAT AGATAGATAG ATAGATAGAT AGATAGATAG ATAGATAGTA
  A
  CAGATTTATT AGAATGGCTT ACAAGCTGTG TGGCCCGGTG CATCCAACAG TGGCTGTCTA
  CCAATGGAAA GTCCAACAAT CCAGTGTTGT TGAGTACCCA A                    
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss147560430	ENSMUSSNP7213865	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs52240887					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:128282646 () rs orientation: forward

Symbol	Name	Function Class
Gm29010	predicted gene 29010	within coordinates
Gm36154	predicted gene, 36154	within coordinates
Rr564740	regulatory region 564740	1803 bp distal
Rr564741	regulatory region 564741	407 bp proximal