rs52240306 SNP Detail

Summary

• ID
  rs52240306
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:121069852 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATCTTTAAT CCCTGCACTT
  GGAAGGAGAA GGCAGGCAGA TCTCTGTGAG TTCGAGGCCA GCCTCGTCTA CATAGAAGCT
  CCAGGTGAGC CAGGGATACA TAGAGAGACT GTCTTTTTTT TTTTTTTTAA AGTACAGGTA
  CACACACACA CACACACACA CACACACACA CACACAATTC ACAATTTCTT TCTGTCAAGT
  Y
  CAGGACTATA ATCAGACAAG TTAACTTTGT CATGTTATTA AAGCTGTGTC TCTTGGATAT
  TGTAATCATC TAAAAATTAC AGCACAAAGA CCCTCCCATG AACACTACCA TTCTGAGCCT
  GTGAAAGTAG AGAGCAAGAG AGCCTTAGAA ACAGCTCCTT AGGGAAGCTG TTCCCTAGAA
  ACAGCTGATC TGCAGGGCAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61237519	NES16854871	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs52240306					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61237519	NES16854871	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:121069852 () rs orientation: forward

Symbol	Name	Function Class
Gm56090	predicted gene, 56090	1556 bp upstream
Rr688904	regulatory region 688904	205 bp distal
Rr688905	regulatory region 688905	297 bp distal
Rr688906	regulatory region 688906	1105 bp proximal
Ulk4	unc-51-like kinase 4	Intron