rs52239343 SNP Detail

Summary

• ID
  rs52239343
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:85432958 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAAAA CTATCAAAAA GGAAAACAAA
  A
  AAAAAAAAAA ACAAAAAAAA GGAAA                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss145392369	ENSMUSSNP6335374	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs52239343					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:85432958 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Lyl1	lymphoblastomic leukemia 1			1389 bp downstream
Nfix	nuclear factor I/X			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Rr368567	regulatory region 368567			1703 bp downstream
Rr666588	regulatory region 666588			1722 bp distal
Tssr82117	transcription start site region 82117			1191 bp upstream
Tssr82118	transcription start site region 82118			1154 bp upstream
Tssr82119	transcription start site region 82119			1127 bp upstream
Tssr82120	transcription start site region 82120			1051 bp upstream
Tssr82121	transcription start site region 82121			502 bp upstream
Tssr82122	transcription start site region 82122			269 bp upstream
Tssr82123	transcription start site region 82123			120 bp upstream
Tssr82124	transcription start site region 82124			75 bp upstream
Tssr82125	transcription start site region 82125			1 bp upstream
Tssr82126	transcription start site region 82126			171 bp downstream