rs52238198 SNP Detail

Summary

• ID
  rs52238198
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:8105212 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      G TCATTGAGGC ATGCTATGAA ATATTATATT TTCTAGTATT
  CTAGTATTGT ATTGAATATA ATATCCTCTC TCTCTCTCTC TCTCTCTCTC TCTCTCTCTC
  T
  CACACACACA CACACACACA CATACCACTG CTTTAACATG CACAAATATG AAGAGAAATA
  ATCTAGATAA TTGAATTTTC CAGATTGCTT ATGTTAGACA T                    
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss132961645	ENSMUSSNP3560907	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs52238198					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:8105212 () rs orientation: forward

Symbol	Name	Function Class
Col28a1	collagen, type XXVIII, alpha 1	Intron
D6Mit348	DNA segment, Chr 6, Massachusetts Institute of Technology 348	within coordinates
Rr626348	regulatory region 626348	263 bp distal
Rr626349	regulatory region 626349	594 bp proximal