rs52237879 SNP Detail

Summary

• ID
  rs52237879
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:86760897 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TATTT ATTTATTATA TGTAAGTACA
  C
  TGTAGCTGTC TTCAGACACT CCAGA                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss133359271	ENSMUSSNP3097598	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs52237879					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:86760897 () rs orientation: forward

Symbol	Name	Function Class
Anxa4	annexin A4	Intron
Rr633511	regulatory region 633511	1186 bp distal
Rr633512	regulatory region 633512	871 bp proximal
Tssr57506	transcription start site region 57506	1147 bp upstream
Tssr57507	transcription start site region 57507	1572 bp upstream
Tssr61859	transcription start site region 61859	378 bp upstream
Tssr61860	transcription start site region 61860	1604 bp downstream
Tssr61861	transcription start site region 61861	1632 bp downstream