rs52235180 SNP Detail

Summary

• ID
  rs52235180
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:150277912 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGCAGATG TATCTGTATA
  AATAAATATT TAAAATAAAC AAATAAAGTG ACTTCCAGAA CCTAGAGAGA TGGCTCAGTG
  GTTAAGAGCA TATAATACCC TGAGTAGTGG TGGCACATGC CTTTAATCCC AGCACTTGGG
  AGGCAGAGAC AGGTGGATTT CTGAGTTCAA GGCCAGCCTG GTCTACAGAG AGAGTTCCAG
  R
  ACAGCCAGGG CTACACAGAG AAACCCTGTC TCAAAAAATA AAAAAATAAA GACAAACACC
  ATACACCTTA ATGACTTAAA AATCCATACT TAGGAGCTGG AGAGAGGACA GTGCACAAGA
  ACTTATGCAT GGTTTCTCAG AGGTATGCTT CCCTCCTAAG CCGTAGAAGA AAGAGTCAAA
  GAGACCTGGC TTCCCTCGGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148049885	ENSMUSSNP1710981	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs52235180					SNP	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:150277912 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Car6	carbonic anhydrase 6			Intron
				Noncoding-Transcript-Variant
Rr605219	regulatory region 605219			567 bp proximal
Rr605220	regulatory region 605220			657 bp proximal
Tssr44724	transcription start site region 44724			939 bp upstream
Tssr44725	transcription start site region 44725			897 bp upstream
Tssr44726	transcription start site region 44726			870 bp upstream
Tssr44727	transcription start site region 44727			822 bp upstream
Tssr44728	transcription start site region 44728			303 bp downstream