rs52234915 SNP Detail

Summary

• ID
  rs52234915
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:138040420 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGAGATAAG ATCAGGTGCC
  CCAGAGGCAA GAAAACACTT CTGCTTCCAA ACGCACATTG TAAAATCACA CCTGCCCACA
  TGCCACAGCA GGTCCTCAAA GACTACCAAC CTCAAAGAAC TCTTCCTTCT GTGCTCTCTG
  TCCCAATGCG CATGCCTTCC TCTGCTCTGT CCCAATGCGC ATGCCTTCCT CTGGCTGCCC
  Y
  TCCCCTTCCT CCCCCTCCTC TTCCTCTTAT ATCCCCTCAA GAGGATGACA GACTTGGGCA
  CAAAGAAGGA AGGAGGCTAT TTGGGTTCTC AATGCTGCTC AGAGGCCAAG AGCTCAGGCC
  TCAGTCTCTG GGTAGCACAG CTACAGAAGA AATCTGGTGT CTCAAGAGGT GGTCACGATA
  ACTGGGTCTC AGCAGTGATC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss135951821	ENSMUSSNP5588394	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	C
ss320979551	CHEV_3_137997623	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs52234915					SNP	C	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:138040420 () rs orientation: forward

Symbol	Name	Function Class
Rr586126	regulatory region 586126	1611 bp proximal