rs52234577 SNP Detail

Summary

• ID
  rs52234577
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:108235205 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TAGACGCCAT CCCATCTTTG CCTGCTCAGT AAAATCTTTA
  GTTCATTTCC ATTTGTTGAG GACATCAGCA TATTTAGAGT TAACTTTTTG TATGTGTTCC
  Y
  TTTGTTTGTT TTCTTGCTCT CTTTCTTTGA AGATTTTTTT TTAATTGCTA TTTCACCTAT
  TCCATGCGTT TAAGCTGTGT TGGATGGGGT TTAGACTCT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss133498431	ENSMUSSNP6090759	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs52234577					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:108235205 () rs orientation: forward

Symbol	Name	Function Class
Itpr1	inositol 1,4,5-trisphosphate receptor 1	Intron
Rr636067	regulatory region 636067	1504 bp proximal
Tssr58057	transcription start site region 58057	329 bp downstream