rs52233626 SNP Detail

Summary

• ID
  rs52233626
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:152722248 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATCAAAGGA AGTGAGAGAG
  AAAGCCGAGA TGGCAGAGGC ACAAACTTCA GTGCTGGAGT TTGCATGTTG CGCTTGGTGG
  TTTTGGTTTC CTTCTGTGTT TCTGAAAAGC TTTAAAGGTG AACACGAGTG TCCATGGCTC
  AAACCTTTTC CTGTTTGGCC GATTTAAATT CCTCCCTCAC TCCACTTACA CACCCATGTG
  M
  CTGAATATAC AAGCGACAGC CTTGTTAGAG GGAGAGAGGG GAGGGTGAGG GGACGAGGGA
  GAGCGGGTGG CAGAGAGAGC AGAATGCCCA AGGCTAGCCC CTATGCATCC TCTTCACCCA
  CAGGAGAACT TGGCTGCTCC TAACAAAATC TTGAAACTCA CAGAACAATC TTGAAAGTGA
  CTTCCTAGCA GGAATAGAAC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss136105614	ENSMUSSNP6855282	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	A
ss321029577	CHEV_3_152679575	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs52233626					SNP	C	C	A	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:152722248 () rs orientation: forward

Symbol	Name	Function Class
Gm16213	predicted gene 16213	within coordinates
Rr587644	regulatory region 587644	1448 bp proximal