rs52232059 SNP Detail

Summary

• ID
  rs52232059
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:153397076 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACACATAT ATATACACAT
  ATGTACAAAT ATAATCATGC ACACATATAT ATGTGTATAT ATACATATGT GTGTATATAT
  ATACGTATGT ATACACACAC ATATAAACAT ATGTGCACAT ATACACTATA CGCATATACC
  TGTACTCATA CAACATACAT ATATACTCAA ACACACATAC CACACACATA TATTCATACA
  Y
  ATATGTGCAC ACACATACAC ACTCGTGCAC ACACACAACT CACTGTGCTT GTATTGCCTT
  TTCCAAGATG ACAGGGACGT GTGCAAGTAT CTAATGAACT GAGCTTATCC ATCACAGAGG
  GATCCCTTCC CTTCATTCTA GTTTGTTTCA ACTGAGGGAT TTAAATTTGT CATAAAGCAT
  TTTAGACCCT CCCCTTCCCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss136111014	ENSMUSSNP5447495	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs52232059					SNP	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:153397076 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr587732	regulatory region 587732			608 bp distal
Rr587733	regulatory region 587733			within coordinates
St6galnac3	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3			Intron
				Noncoding-Transcript-Variant