rs52230738 SNP Detail

Summary

• ID
  rs52230738
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:135682116 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACACCCAG GTTTACAGTG
  GCAGACTTGA TGGGTGTCTG GTATCTCAGA TGGAGAGCCT CATGCTCACG AGGGGAACAC
  TTCAGCCCAG CGCTGCTCTC CAGCCTTGTT TTTGTTTTGG TTGTTAGTTT TTTGGGTTTT
  GGGTTTTGTT TTGTTTTGTT TTGTTTTTGA GACAAGGTTT CTCTGTGTAG CCCTGGCTGT
  R
  CTAGAACTCC CTCTGTAGAC CAGGCTGGCC TCGGACTCAC GGACATCCAC CTGCCTCTGC
  CTCCTGAGTG CTGGGATGAA AGGTGTGCTC TGTTTTGAGG TATAAGCAGT TCCGAGGGCT
  GCTTGAGAAA GTAGTGCAAG CCATCACAGA ATTGCTCTGC TGCCTCACGT TCCAGAGGTC
  AGGAGTGTTG GCTGCGTCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss147554678	ENSMUSSNP7155934	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs52230738					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135682116 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Hmgcl	3-hydroxy-3-methylglutaryl-Coenzyme A lyase			Intron
				Noncoding-Transcript-Variant
Rr398602	regulatory region 398602			201 bp downstream
Rr602217	regulatory region 602217			1185 bp distal
Rr602218	regulatory region 602218			98 bp distal
Rr602219	regulatory region 602219			345 bp distal