rs52229170 SNP Detail

Summary

• ID
  rs52229170
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:117918057 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TACATGCATG TTAGGCAAGC ACTCTTCCGA CTGAGCTACA
  CCCCCAACCA GAGGTAGTAT CTTTTTAAAA GAAAGAAAGA AAGAAAGAAA GAAAGAAAGA
  R
  AGAAAGAAAG AAAGAAAGAA AGAAAGAAAG AGAGGAAGAA AGAAAGAGAG GAAGAAAAGG
  TGTATTTACT TAGTTTGTGT ATATGAGTAC ATTGCCATG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147298817	ENSMUSSNP2859964	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs52229170					SNP	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:117918057 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr598297	regulatory region 598297			164 bp proximal
Rr598298	regulatory region 598298			1090 bp proximal
St3gal3	ST3 beta-galactoside alpha-2,3-sialyltransferase 3			Intron
				Noncoding-Transcript-Variant