rs52225683 SNP Detail

Summary

• ID
  rs52225683
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  128
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:125197054 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGAAATTGTC CGAATATTAC ATGTATTGCT TATAACTGAA
  GACACACACA CCAGATTAGA GAGTATTCTG CAGCTCTATT CTGTCTTGAA ACAAGTTTTC
  W
  TTTTTTTTCT TGTATATTTA TATTTAAATA TATATATGAA TATATATATA TATAATTTTT
  AAATTTGAGA AATAGAAATG TAGTTTCCCA TAGGAATCAA                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61078013	NES16589250	PERLEGEN	MM_PANEL2	f	SNP	T	T	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs52225683					SNP	T	T	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61078013	NES16589250	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:125197054 () rs orientation: forward

Symbol	Name	Function Class
Ndst4	N-deacetylase/N-sulfotransferase (heparin glucosaminyl) 4	671 bp upstream
Rr584608	regulatory region 584608	187 bp proximal
Rr584609	regulatory region 584609	682 bp proximal
Tssr31558	transcription start site region 31558	667 bp upstream
Tssr31559	transcription start site region 31559	920 bp upstream