rs52225391 SNP Detail

Summary

• ID
  rs52225391
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:102916706 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCTCTCTCTC TCTCTCTCTC TCTCTCTCTC AGTATGGGTT
  GTTGGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTCTGTGT CTGTGTCTGT
  R
  TGTCTGTGTG TCTGTGTGTT CTTGTCCTTT TTGTTTATTT CAGAGATTTG CTCACTGCAT
  ATCCCAAGCT ACTCTTGAAC TCATGATCTT CCTGGCTCA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147130461	ENSMUSSNP4664697	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs52225391					SNP	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:102916706 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Apip	APAF1 interacting protein			Intron
				Noncoding-Transcript-Variant
D2Mit388	DNA segment, Chr 2, Massachusetts Institute of Technology 388			within coordinates
Rr561794	regulatory region 561794			1953 bp distal
Rr561795	regulatory region 561795			1485 bp distal
Rr561796	regulatory region 561796			169 bp proximal
Rr561797	regulatory region 561797			1924 bp proximal