rs52224464 SNP Detail

Summary

• ID
  rs52224464
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:102997628 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGATGGATG AGCTGAAGGA
  GCTGAAGAAC AACCCCCACC GGGACTTTTA TAACTGCAGG AAGGTAAGTG TGTCAGCTCA
  GAGCTGCTCA GAGGGGACAC CTGTGTGGAG ACTTCTGAGG GACCAGATGC CGCTTGCTGA
  GGAACCTACA ACTTCTGCAG GTTACGTGGA TTGTAGTGAA GGCAGGTAAA TTATATCTAG
  Y
  AGATTTGAAA GGCCATGCTG TTGCTTGTCG AAGAGAGAAA GAAAGAGAGA GAGAGAGAGA
  GAGAGAGAGA GAGAGAGAGA GAAAGAAAGA AGGAAAGAAA GATAAAAGAA AGAGAGAGAG
  AGAAAGGGAA AGGGGAGGAG AGAAGAGGAG AGAAGAGAAA GATGAGGACA CAGGAAAATT
  ATAATTAAGA AGAGGAGCCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60430059	NES15929611	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs52224464					SNP	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60430059	NES15929611	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:102997628 () rs orientation: forward

Symbol	Name	Function Class
Ampd1	adenosine monophosphate deaminase 1	Intron
Rr582303	regulatory region 582303	1505 bp proximal
Tssr30964	transcription start site region 30964	115 bp downstream
Tssr30965	transcription start site region 30965	71 bp downstream