rs52223625 SNP Detail

Summary

• ID
  rs52223625
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:95290676 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      G ATTGTTGAAA AAAAAATGAC TTAATTCAAT TGTTTTATGG
  CTTTAACTGG TTTGGTTTTG TTTCAGTTTG GTTTGGGATT TTTGTTTTGT TTTGTTTCAG
  Y
  TTTTGTTGTT GTTGTTGTTG TTGTGTGGGT TTCATTTCAG GTTTTAAAAC TTAAAAAATA
  GTATGATGTA GGACCAGGGA AATGGCTCCA TGGGTAAAGG C                    
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	MSM/Ms
ss136828262	ENSMUSSNP6651869	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	MSM/Ms
rs52223625					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:95290676 () rs orientation: forward

Symbol	Name	Function Class
Chst2	carbohydrate sulfotransferase 2	1353 bp upstream
Gm35915	predicted gene, 35915	69 bp downstream
Gm37805	predicted gene, 37805	55 bp downstream
Rr684790	regulatory region 684790	1258 bp distal
Rr684791	regulatory region 684791	339 bp distal
Tssr86547	transcription start site region 86547	1184 bp downstream
Tssr90904	transcription start site region 90904	1504 bp upstream
Tssr90905	transcription start site region 90905	1432 bp upstream
Tssr90906	transcription start site region 90906	1411 bp upstream
Tssr90907	transcription start site region 90907	1384 bp upstream
Tssr90908	transcription start site region 90908	1347 bp upstream
Tssr90909	transcription start site region 90909	1324 bp upstream
Tssr90910	transcription start site region 90910	1290 bp upstream
Tssr90911	transcription start site region 90911	1262 bp upstream
Tssr90912	transcription start site region 90912	844 bp upstream