rs52222801 SNP Detail

Summary

• ID
  rs52222801
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:10315505 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TATTTTTCTT GTATTTACTT ATTTGTGTAT GGTATGTGTG
  TATGTATGTT TGTGTTGTAT TTACTTATTT GTGTGGTATA GTGTGTGTGT GTGTGTGTGT
  R
  TGTGTGTGTG TGTGTGTGTA GTGTGTGTGT ATGTGAGTTT GGGTTATTTG TTCTCTATTA
  CACTTTTTAA TGTTATATAT TTTATTATTT AAAGATTGC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	LG/J	SM/J
ss134580681	ENSMUSSNP336213	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
ss320653146	CHEV_3_10250445	CHEVERUD	SCREENING_POP	f	SNP		G	A
SNP Consensus Information
SNP					Consensus Type	DBA/2J	LG/J	SM/J
rs52222801					SNP	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:10315505 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Fabp12	fatty acid binding protein 12			Intron
				Noncoding-Transcript-Variant
Rr397603	regulatory region 397603			700 bp downstream
Rr573596	regulatory region 573596			655 bp distal
Rr573597	regulatory region 573597			865 bp distal