rs52222461 SNP Detail

Summary

• ID
  rs52222461
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:97857286 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCTTTCAT TCTCTTGTAT
  CTTGTAATCT GTCACTGGAA GCTAGTCCTT GAGTATGTTG ACCCTCTTGT GAGTCTGAAT
  TTTTCTTTCC CCTTAAGGAA TGTTGATTTC CTTCTGGTGA TCAGTTAATT TGCTTATTGA
  TCAGTTTGAT TGTTTTCAGG TTTATTTTTA AACTTTGAGA TTAGATCTAG CATAGTCTTG
  Y
  TATATGCCTA GTTTAACCTT CTATTTCTCT TATTGTCTCT TTCTTCTTCT CTCTCTGTCT
  GTCTCTGTTT GTGGTTGTGT GTATACGTGC GTGCTCAGGT AGATATGTGT GCAGACACAT
  GTAGACAATT CGGTTTTGTC CTCTGGCTCT CTCATCCTAT CTTGTTTTTT TTTTTTTTTT
  TTTTTTTTTT TGAGACAAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ
ss60915319	NES16222702	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ
rs52222461					SNP	T	T	T	T	T	T	C	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60915319	NES16222702	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:97857286 () rs orientation: forward

Symbol	Name	Function Class
Mitf	melanogenesis associated transcription factor	Intron
Rr635233	regulatory region 635233	88 bp proximal
Rr635234	regulatory region 635234	1606 bp proximal
Tssr57900	transcription start site region 57900	190 bp upstream