rs52221139 SNP Detail

Summary

• ID
  rs52221139
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:150684842 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATCATAACT CTGTGAGGTG
  GTGGTGCACA CCTTTAATCC CAGCACTCAG GAGGCAGAGG CAGATGGATC TCCAAGTTTG
  AGGCCAGCCT GGTCTATAGA CCAGGCAGTT CCAGGGCAGT CAGGGATACA CAGAAAAACC
  TTGTCTTGAA AAAAACAAAA CAAAACAAAA CAAAACAAAA ACCAAAATAA AACCCAAAAT
  M
  CCAACCCAAA CCAATCATTA CTCATGTACA GTGCACTATA CACTGGCTTG GGAATGCCTA
  GAACCGTGAA AGAGACTTCC ATGCCACCAC TGTCACCTAC AGGCACTTAG CACTGCACCT
  TCAGGAAGAC AGGTGCTTTC CCAGGAACAG CCTGGTAATC CCTGCCCTCT CCTAGCCAGC
  ACCCAAAGCC ATGTGCGCCT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss147951594	ENSMUSSNP1684266	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs52221139					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:150684842 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Abhd12	abhydrolase domain containing 12			Intron
				Noncoding-Transcript-Variant
Rr567117	regulatory region 567117			373 bp distal
Rr567118	regulatory region 567118			1899 bp proximal
Tssr26717	transcription start site region 26717			535 bp upstream
Tssr26718	transcription start site region 26718			513 bp upstream