rs52219310 SNP Detail

Summary

• ID
  rs52219310
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:72358945 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGGCC TCCAAGGACA CGTGTCACAC
  R
  TGGTCACAGT CACACATGCA GAGGA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
ss133284311	ENSMUSSNP3472235	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	G		A
ss321821600	CHEV_6_72331956	CHEVERUD	SCREENING_POP	f	SNP				G		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
rs52219310					SNP	A	A	G	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:72358945 () rs orientation: forward

Symbol	Name	Function Class
Gm52494	predicted gene, 52494	within coordinates
Rr632157	regulatory region 632157	1551 bp distal
Rr632158	regulatory region 632158	1004 bp distal
Rr632159	regulatory region 632159	1374 bp distal
Rr632160	regulatory region 632160	1417 bp proximal
Rr632161	regulatory region 632161	1518 bp proximal
Tssr61448	transcription start site region 61448	1479 bp upstream
Tssr61449	transcription start site region 61449	257 bp upstream
Tssr61450	transcription start site region 61450	203 bp upstream
Vamp5	vesicle-associated membrane protein 5	1494 bp upstream