rs52218310 SNP Detail

Summary

• ID
  rs52218310
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:172460117 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTCC CACTCTTTTC GGACTCCAGC
  Y
  CCGGCCCCGC CCACTCATTT CCTTC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	DBA/2J	LG/J	SM/J
ss120015549	PARCsnp_1.10918	PARC_SEQ	INBRED	f	SNP	T	C
ss146197854	ENSMUSSNP6799613	ENSEMBL	ENSEMBL_Sanger	f	SNP		C
ss320126695	CHEV_1_174562681	CHEVERUD	SCREENING_POP	f	SNP			C	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	DBA/2J	LG/J	SM/J
rs52218310					SNP	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172460117 () rs orientation: forward

Symbol	Name	Function Class
Dusp23	dual specificity phosphatase 23	Intron
Gm35601	predicted gene, 35601	479 bp upstream
Rr396594	regulatory region 396594	343 bp upstream
Rr423641	regulatory region 423641	within coordinates
Rr423642	regulatory region 423642	208 bp proximal
Rr423643	regulatory region 423643	402 bp proximal
Rr423644	regulatory region 423644	507 bp proximal
Rr423645	regulatory region 423645	1255 bp proximal
Tssr10245	transcription start site region 10245	514 bp upstream
Tssr15247	transcription start site region 15247	241 bp downstream
Tssr15248	transcription start site region 15248	265 bp downstream
Tssr15249	transcription start site region 15249	381 bp downstream