rs52209923 SNP Detail

Summary

• ID
  rs52209923
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:110501449 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCCCCATC TCAGTGAAGT
  CCTAAAAGAC ACAGAAGATT GGGAGGATGC TCCAGTAGGC AGGGTGCAAG GGCTCTCCTA
  GGGTCTCCCT GACTCCTTTC TGTGCAGTGT CATATCCCTG GTTGCCTTTG GGCAACCCCA
  AATCACCCAG TGCTGTGTCC TGTTGTTCTG TGATTCCCTT CTCCCAGCTG ACCTTCTGAG
  M
  ACCCGGCCTA GGACAGACAC TTTTTTTTTC TCTTTTCATT TTTTTTTTTA AGATTTATTT
  ATTTATTATA TGTAAGTACA CTGTAGCTGT CTTCAGACAC ACCAGAAGAG GGAGTCAGAT
  CTCATTACGG ATGGTTGTGA GTCACCATGT GGTTGCTGGG ATTTGAACTC CGGACCTTTG
  GAAGAGCAGT CGGGTACTCT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61218269	NES16714824	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs52209923					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61218269	NES16714824	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:110501449 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Lrcol1	leucine rich colipase-like 1			Intron
				Noncoding-Transcript-Variant
Rr616873	regulatory region 616873			1283 bp proximal
Rr616874	regulatory region 616874			1343 bp proximal