rs52209862 SNP Detail

Summary

• ID
  rs52209862
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:109335679 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCTCTGAGA GTTCGAGGCC
  AGTCTGGTCT GTAATACAAG TTCCAGAACA GCCAAGACTA AGCAAAGAAA CCCTGTCCTG
  AAAACCAAAA AAAGAAAGAG AGAGAGAGAG AGAGAGAGAG AGAGAGAGAG AGAGAGAAGA
  GAGAAAGAGA GAAGGGTGTT GTTGAATGCC TGTAATTCAA GCATTTAGAG CCAAGACAGG
  W
  ACATGTCTAG TTCAAGGCTA GCCAATGTTA CTTAACAAGC AAACAAACAA TTCTGCCTCA
  AAAAAAGTCT ATATTCAATC AAACAAAAAA ATTTTTTTTT TGAAATAGCA TCTCACTATA
  TAGCTCTGGC TGTCCTGGAA CTCCCTACGT AGACCAGACT AGCCTCAAAC TCAGAGGTCT
  ACCTGTCTGT CTCTAAAATG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	MSM/Ms
ss147197985	ENSMUSSNP1834542	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	A/J	MSM/Ms
rs52209862					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:109335679 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14574	CpG island 14574	1464 bp distal
Rnf11	ring finger protein 11	Intron
Rr597332	regulatory region 597332	1071 bp distal
Rr597333	regulatory region 597333	1632 bp distal
Tssr42766	transcription start site region 42766	1986 bp upstream
Tssr42767	transcription start site region 42767	1874 bp upstream
Tssr42768	transcription start site region 42768	1817 bp upstream
Tssr42769	transcription start site region 42769	1755 bp upstream