rs52207872 SNP Detail

Summary

• ID
  rs52207872
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:156577591 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GATGT CCCTACCCCA CCCCACCCCA
  C
  CCCACCAGAC CTCCCCACTC CCTGG                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J
ss145804093	ENSMUSSNP254469	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
SNP Consensus Information
SNP					Consensus Type	DBA/2J
rs52207872					SNP	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:156577591 () rs orientation: forward

Symbol	Name	Function Class
Cpgi902	CpG island 902	1339 bp distal
Gm39683	predicted gene, 39683	within coordinates
Rr421242	regulatory region 421242	1056 bp distal
Rr421243	regulatory region 421243	254 bp distal
Rr421244	regulatory region 421244	within coordinates
Rr421245	regulatory region 421245	1737 bp proximal