rs52205980 SNP Detail

Summary

• ID
  rs52205980
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:66987342 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACAAGACCT TTGCTGGGAA
  GAGCAAGAAC GAGTGTGTGC TACCCTGCAA CTGCATGTCC AGGGCACACA GAGCAGGGTC
  AGAGCTAGCA GATGTCAAAG AAGCAACTAC CTATCAGATC TAGCAAAAGA TTTTCCAGTT
  TTTCTAGACA TCATCCTTCT ACAGTGAAAT CTCTGTTTTT CTATTTATTT TTATTCATTT
  S
  TTCATTCATA AATTTGTTGT TTGTTTTTTT GAGACAGTCT CACTGTGTAT CCTTGACTGG
  CTTTGAGTGT CTACCTACCT CTGCCTCCTG AGAGCTGGGA TTAAAGGCAT GCACCTTAGC
  CAGCTGAAAT CTCTCTTTTT CCAAAGGGTG ATAGTCAATT TGATACTAAA ACACACTGTA
  CAGTGCTCGT GGGACCCAGT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60892267	NES15964138	PERLEGEN	MM_PANEL2	f	SNP	G	G	C	G	C	G	G	G
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs52205980					SNP	G	G	C	G	C	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60892267	NES15964138	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:66987342 () rs orientation: forward

Symbol	Name	Function Class
Gm36816	predicted gene, 36816	1371 bp upstream
Gng12	guanine nucleotide binding protein (G protein), gamma 12	Intron
Rr379521	regulatory region 379521	403 bp downstream
Rr631571	regulatory region 631571	1713 bp distal
Rr631572	regulatory region 631572	1212 bp distal
Rr631573	regulatory region 631573	719 bp distal