rs52205836 SNP Detail

Summary

• ID
  rs52205836
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:72533829 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTCAGTGCTC TTAACTGCTG AGCCATTTCT CCAGCCTCCT
  ATTTTTTTTG AAAAAAAATT TTTTTTGTAA TTTGATTATA TTTTTAAAAA TTATGTAGCC
  R
  GGCGGTGGTG GCGCATGCCT TTAATCTCAG CACTTGGGAG GCAGAGGCAG GCAGATTTCT
  GAGTTCGAGG CCAGCCTGGT CTACAAAGTG AGTGCCAGG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss133285577	ENSMUSSNP6039939	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	A
ss321822105	CHEV_6_72506840	CHEVERUD	SCREENING_POP	f	SNP				A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs52205836					SNP	G	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:72533829 () rs orientation: forward

Symbol	Name	Function Class
Capg	capping actin protein, gelsolin like	Intron
Tssr57142	transcription start site region 57142	1043 bp downstream
Tssr57143	transcription start site region 57143	1017 bp downstream
Tssr57144	transcription start site region 57144	728 bp downstream
Tssr57145	transcription start site region 57145	688 bp downstream
Tssr57146	transcription start site region 57146	669 bp downstream
Tssr57147	transcription start site region 57147	488 bp upstream
Tssr57148	transcription start site region 57148	1827 bp upstream
Tssr57149	transcription start site region 57149	1920 bp upstream
Tssr61469	transcription start site region 61469	943 bp downstream