rs52205179 SNP Detail

Summary

• ID
  rs52205179
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:8639128 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACATAAAACA CCTGGCAGCC
  AGAGCTCACC GTGAGTGCCA ATCTCTGTCT CCTTAAAATA GCAGAAGGAC TTTTGGGAGG
  AGGTCTAGGG CTTACTTAAA CGGGGGTAAC ATTTGAGACC CAAAGCTCAC AAAAGGAAGG
  TCCTGCTTTG CCCAGAGTCT CCAGTTTAGT TGGCAGCCTG GCAGCCGGTC TTCCCCATTT
  G
  CTGGGTCCCT CACCTGCTCC TCTTCCCTCC CTTCCCTCCC CTTTCCTTTC CCTAGAAAGC
  ATTGACTCCA TGCCCCTCCC CTCCAAGTCT GCTGTCCCAG AAGCCTCTCT TCTACTTTTA
  ACTGAAACTT TCTCTTTTTC CTGCCACAAG GATTCGCCAT AGCTTCCCCT GTACTGCCTG
  GCTCCCCAGA TCACAAACCA                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss146766648	ENSMUSSNP3482755	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss323245281	CHEV_10_8483162	CHEVERUD	SCREENING_POP	f	SNP			G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs52205179					SNP	G	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:8639128 () rs orientation: forward

Symbol	Name	Function Class
Rr384117	regulatory region 384117	345 bp downstream
Rr427375	regulatory region 427375	1914 bp distal
Rr427376	regulatory region 427376	33 bp distal
Rr427377	regulatory region 427377	140 bp proximal
Sash1	SAM and SH3 domain containing 1	Intron
Tssr3133	transcription start site region 3133	968 bp upstream
Tssr96640	transcription start site region 96640	1105 bp upstream
Tssr96641	transcription start site region 96641	1081 bp upstream
Tssr96642	transcription start site region 96642	1050 bp upstream
Tssr96643	transcription start site region 96643	994 bp upstream
Tssr96644	transcription start site region 96644	898 bp upstream
Tssr96645	transcription start site region 96645	748 bp upstream