rs52204571 SNP Detail

Summary

• ID
  rs52204571
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:59243170 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      C ACACACACAT ACACACACAC ACACACACAC ACACATACAC
  ACACATACTC TCTCACACAC ACACATACTC TCTCACACAC ACACACACAC ACACACACAC
  A
  CTCTCTCTCT CTCTCTCTCT CACACACATA CACACACACA CACCCCTACC TAGCTATCCT
  GGAACTAGCT GAATAAACTA AGCTAGTGGA AGATGGCCTG G                    
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss146400815	ENSMUSSNP5850168	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs52204571					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:59243170 () rs orientation: forward

Symbol	Name	Function Class
Gm68412	predicted gene, 68412	455 bp downstream
Rr593011	regulatory region 593011	1848 bp distal
Rr593012	regulatory region 593012	165 bp distal
Rr593013	regulatory region 593013	1337 bp proximal
Rr593014	regulatory region 593014	1735 bp proximal